Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR41593.1 | SFR53320.1 | SAMN04488070_0711 | SAMN04488070_1735 | Diguanylate cyclase (GGDEF) domain-containing protein. | Chemotaxis protein MotB. | 0.806 |
SFR41593.1 | SFR55784.1 | SAMN04488070_0711 | SAMN04488070_1956 | Diguanylate cyclase (GGDEF) domain-containing protein. | Chemotaxis protein MotB. | 0.806 |
SFR41593.1 | SFR55794.1 | SAMN04488070_0711 | SAMN04488070_1957 | Diguanylate cyclase (GGDEF) domain-containing protein. | Chemotaxis protein MotA. | 0.969 |
SFR41593.1 | SFR55940.1 | SAMN04488070_0711 | SAMN04488070_1970 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.960 |
SFR41593.1 | SFR56098.1 | SAMN04488070_0711 | SAMN04488070_1984 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar hook-associated protein 1 FlgK. | 0.975 |
SFR41593.1 | SFR56109.1 | SAMN04488070_0711 | SAMN04488070_1985 | Diguanylate cyclase (GGDEF) domain-containing protein. | Rod binding protein. | 0.774 |
SFR41593.1 | SFR56143.1 | SAMN04488070_0711 | SAMN04488070_1988 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family. | 0.968 |
SFR41593.1 | flgH | SAMN04488070_0711 | SAMN04488070_1987 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.600 |
SFR41593.1 | flhA | SAMN04488070_0711 | SAMN04488070_1954 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.925 |
SFR41593.1 | flhC | SAMN04488070_0711 | SAMN04488070_1958 | Diguanylate cyclase (GGDEF) domain-containing protein. | Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. | 0.443 |
SFR53320.1 | SFR41593.1 | SAMN04488070_1735 | SAMN04488070_0711 | Chemotaxis protein MotB. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.806 |
SFR53320.1 | SFR55784.1 | SAMN04488070_1735 | SAMN04488070_1956 | Chemotaxis protein MotB. | Chemotaxis protein MotB. | 0.491 |
SFR53320.1 | SFR55794.1 | SAMN04488070_1735 | SAMN04488070_1957 | Chemotaxis protein MotB. | Chemotaxis protein MotA. | 0.980 |
SFR53320.1 | SFR55940.1 | SAMN04488070_1735 | SAMN04488070_1970 | Chemotaxis protein MotB. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.779 |
SFR53320.1 | SFR56098.1 | SAMN04488070_1735 | SAMN04488070_1984 | Chemotaxis protein MotB. | Flagellar hook-associated protein 1 FlgK. | 0.833 |
SFR53320.1 | SFR56109.1 | SAMN04488070_1735 | SAMN04488070_1985 | Chemotaxis protein MotB. | Rod binding protein. | 0.736 |
SFR53320.1 | SFR56143.1 | SAMN04488070_1735 | SAMN04488070_1988 | Chemotaxis protein MotB. | Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family. | 0.783 |
SFR53320.1 | flgH | SAMN04488070_1735 | SAMN04488070_1987 | Chemotaxis protein MotB. | Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.591 |
SFR53320.1 | flhA | SAMN04488070_1735 | SAMN04488070_1954 | Chemotaxis protein MotB. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.852 |
SFR53320.1 | flhC | SAMN04488070_1735 | SAMN04488070_1958 | Chemotaxis protein MotB. | Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. | 0.640 |
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