STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR58863.1Ribosomal protein S12 methylthiotransferase accessory factor. (728 aa)    
Predicted Functional Partners:
SFR56661.1
Ribosome-dependent ATPase.
  
  
 0.848
SFR40627.1
Nitroreductase.
  
  
 0.839
SFR51671.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
  0.709
SFR50632.1
Serine/threonine protein kinase.
  
  
 0.695
SFR56672.1
ABC-2 type transport system permease protein.
  
  
 0.599
SFR59498.1
ABC-2 type transport system permease protein.
  
  
 0.599
SFR42013.1
Nucleoside-specific outer membrane channel protein Tsx.
  
     0.589
SFR58852.1
Hypothetical protein.
       0.545
thiI
[ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
  
 0.529
SFR56230.1
Flagella synthesis protein FlgN.
  
     0.418
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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