Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EHQ51931.1COG1748 Saccharopine dehydrogenase and related proteins. (399 aa)    
Predicted Functional Partners:
EHQ51932.1
NspC; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
 
 0.992
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.850
EHQ53141.1
COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
    
  0.765
EHQ51485.1
COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
    
  0.759
EHQ52620.1
Glycosyl hydrolase family protein; COG0388 Predicted amidohydrolase.
    
  0.741
EHQ51312.1
COG0174 Glutamine synthetase.
     
  0.733
bioA
Adenosylmethionine--8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.
    
  0.728
folE
COG0302 GTP cyclohydrolase I.
   
   0.712
smc
Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.709
EHQ52391.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
    
  0.709
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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