Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ52066.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
EHQ52065.1
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
       0.552
EHQ52067.1
COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.482
nifW
Nitrogenase-stabilizing/protective protein nifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
       0.408
EHQ52069.1
NifZ.
       0.408
EHQ52070.1
Nitrogen fixation protein NifM; COG0760 Parvulin-like peptidyl-prolyl isomerase.
       0.408
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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