Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ52476.1YcfA family protein; COG1724 Predicted periplasmic or secreted lipoprotein. (60 aa)    
Predicted Functional Partners:
EHQ52477.1
Hypothetical protein.
 
 
 0.997
EHQ53739.1
Addiction module toxin, rele/stbe family protein; COG3041 Uncharacterized protein conserved in bacteria.
 
  
 0.803
EHQ53740.1
Addiction module antitoxin, relb/dinj family protein; COG3077 DNA-damage-inducible protein J.
 
  
 0.740
EHQ53376.1
COG2944 Predicted transcriptional regulator.
     
 0.710
EHQ53695.1
AbrB family transcriptional regulator; COG2002 Regulators of stationary/sporulation gene expression.
     
 0.708
EHQ52553.1
Hypothetical protein; COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
  
 
 0.699
EHQ52786.1
Transcriptional regulator/antitoxin, MazE.
     
 0.699
EHQ52005.1
COG4115 Uncharacterized protein conserved in bacteria.
     
 0.670
EHQ52604.1
Txe/YoeB family addiction module toxin; COG4115 Uncharacterized protein conserved in bacteria.
     
 0.670
EHQ53772.1
COG4115 Uncharacterized protein conserved in bacteria.
     
 0.670
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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