EHQ52633.1 protein (Ectothiorhodospira sp. PHS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHQ52633.1

COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (283 aa)

Predicted Functional Partners:

EHQ52634.1

0.951

EHQ52632.1

0.742

EHQ51075.1

0.504

EHQ51685.1

0.426

EHQ51926.1

0.415

EHQ51296.1

0.400

Your Current Organism:

Ectothiorhodospira sp. PHS1

NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHQ51075.1	EHQ52633.1	ECTPHS_00200	ECTPHS_08081	methylated-DNA/protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.504
EHQ51296.1	EHQ52633.1	ECTPHS_01309	ECTPHS_08081	Hypothetical protein.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.400
EHQ51685.1	EHQ52633.1	ECTPHS_03272	ECTPHS_08081	COG0281 Malic enzyme; Belongs to the malic enzymes family.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.426
EHQ51926.1	EHQ52633.1	ECTPHS_04493	ECTPHS_08081	Putative transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.415
EHQ52632.1	EHQ52633.1	ECTPHS_08076	ECTPHS_08081	TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.742
EHQ52632.1	EHQ52634.1	ECTPHS_08076	ECTPHS_08086	TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.	COG0659 Sulfate permease and related transporters (MFS superfamily).	0.570
EHQ52633.1	EHQ51075.1	ECTPHS_08081	ECTPHS_00200	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	methylated-DNA/protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	0.504
EHQ52633.1	EHQ51296.1	ECTPHS_08081	ECTPHS_01309	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	Hypothetical protein.	0.400
EHQ52633.1	EHQ51685.1	ECTPHS_08081	ECTPHS_03272	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	COG0281 Malic enzyme; Belongs to the malic enzymes family.	0.426
EHQ52633.1	EHQ51926.1	ECTPHS_08081	ECTPHS_04493	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	Putative transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).	0.415
EHQ52633.1	EHQ52632.1	ECTPHS_08081	ECTPHS_08076	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.	0.742
EHQ52633.1	EHQ52634.1	ECTPHS_08081	ECTPHS_08086	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	COG0659 Sulfate permease and related transporters (MFS superfamily).	0.951
EHQ52634.1	EHQ52632.1	ECTPHS_08086	ECTPHS_08076	COG0659 Sulfate permease and related transporters (MFS superfamily).	TraR/DksA family transcriptional regulator; COG1734 DnaK suppressor protein.	0.570
EHQ52634.1	EHQ52633.1	ECTPHS_08086	ECTPHS_08081	COG0659 Sulfate permease and related transporters (MFS superfamily).	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.951