Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ53338.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
EHQ53404.1
Hypothetical protein.
  
    0.852
EHQ53340.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
       0.836
EHQ53339.1
Winged helix family two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.777
EHQ53337.1
Thioredoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.533
EHQ53336.1
Hypothetical protein; COG5626 Uncharacterized conserved small protein.
       0.481
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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