Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EHQ53730.1COG4970 Tfp pilus assembly protein FimT. (162 aa)    
Predicted Functional Partners:
EHQ53729.1
COG4967 Tfp pilus assembly protein PilV.
 
  
 0.969
EHQ53728.1
COG4966 Tfp pilus assembly protein PilW.
 
  
 0.926
EHQ53727.1
Tfp pilus assembly protein PilX.
 
  
 0.913
EHQ53751.1
Methylation site containing protein; COG4968 Tfp pilus assembly protein PilE.
 
  
 0.849
EHQ53752.1
COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
 
  
 0.848
EHQ53370.1
Hypothetical protein.
 
  
 0.805
EHQ53369.1
Type IV pilus modification protein PilV; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.800
EHQ52320.1
COG3166 Tfp pilus assembly protein PilN.
 
  
 0.792
EHQ52318.1
COG3168 Tfp pilus assembly protein PilP.
  
  
 0.788
EHQ52319.1
COG3167 Tfp pilus assembly protein PilO.
 
  
 0.787
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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