Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ53765.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (252 aa)    
Predicted Functional Partners:
EHQ53748.1
PA14 domain-containing protein.
   
 
 0.859
EHQ51579.1
COG3203 Outer membrane protein (porin).
    
 0.813
EHQ52769.1
Porin; COG3203 Outer membrane protein (porin).
    
 0.813
EHQ52293.1
Polysaccharide export protein, outer membrane; COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.760
EHQ53295.1
Sodium-type flagellar protein MotY; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
  
  0.739
EHQ51621.1
Hypothetical protein.
    
  0.731
EHQ52224.1
Hypothetical protein.
    
  0.731
EHQ53731.1
Hypothetical protein.
    
  0.731
EHQ51295.1
Hypothetical protein.
    
  0.699
EHQ51325.1
Hypothetical protein.
    
  0.699
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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