Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ53770.1Transposon IS605 OrfB; COG0675 Transposase and inactivated derivatives. (122 aa)    
Predicted Functional Partners:
EHQ53802.1
COG0675 Transposase and inactivated derivatives.
 
     0.898
EHQ53805.1
COG0675 Transposase and inactivated derivatives.
 
     0.896
EHQ53771.1
Hypothetical protein; COG2452 Predicted site-specific integrase-resolvase.
 
    0.880
EHQ53797.1
Transposase, IS605 OrfB; COG0675 Transposase and inactivated derivatives.
  
     0.718
EHQ53385.1
COG0675 Transposase and inactivated derivatives.
  
     0.714
EHQ53662.1
Transposase, IS605 OrfB; COG0675 Transposase and inactivated derivatives.
  
     0.704
EHQ52124.1
COG0675 Transposase and inactivated derivatives.
  
     0.696
EHQ53747.1
Transposase, IS605 OrfB family, central region; COG0675 Transposase and inactivated derivatives.
  
     0.689
EHQ52600.1
Transposase, IS605 OrfB; COG0675 Transposase and inactivated derivatives.
  
     0.676
EHQ51900.1
Resolvase domain-containing protein; COG2452 Predicted site-specific integrase-resolvase.
  
    0.604
Your Current Organism:
Ectothiorhodospira sp. PHS1
NCBI taxonomy Id: 519989
Other names: E. sp. PHS-1, Ectothiorhodospira sp. PHS-1
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