Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT35917.1Uncharacterized protein. (138 aa)    
Predicted Functional Partners:
AKT35914.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.733
AKT41305.1
DNA-directed RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.688
AKT44078.1
Uncharacterized protein.
  
     0.514
AKT38227.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.513
AKT42460.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.489
AKT43308.1
Uncharacterized protein.
 
    0.434
AKT35918.1
Xenobiotic ABC transporter ATP-binding protein.
       0.419
AKT35919.1
ABC transporter.
       0.419
AKT42126.1
Uncharacterized protein.
  
     0.413
AKT40523.1
Uncharacterized protein.
  
     0.407
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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