STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capKCapsule biosynthesis protein CapK. (457 aa)    
Predicted Functional Partners:
AKT44083.1
Oxidoreductase FAD-binding domain-containing protein.
  
 
 0.922
AKT39618.1
Amidase; Belongs to the amidase family.
    
  0.903
AKT36021.1
Uncharacterized protein.
 
    0.859
AKT36019.1
Permease.
 
     0.703
AKT37786.1
Glycosyl transferase family 1.
 
    0.525
livF
Amino acid ABC transporter ATPase.
  
    0.512
AKT36017.1
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
    0.507
AKT36018.1
Uncharacterized protein.
       0.491
AKT36016.1
ABC transporter.
  
    0.474
aldA-3
Aldehyde dehydrogenase.
 
 
 
 0.441
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.