STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT36137.1ECF family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)    
Predicted Functional Partners:
AKT36136.1
Uncharacterized protein.
 
 
 0.867
AKT42580.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.756
AKT42864.1
RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.751
AKT36355.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.728
AKT40567.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.727
AKT36034.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.726
algU-2
RNA polymerase sigma factor AlgU; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.725
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.717
AKT43139.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.704
AKT38132.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.697
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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