STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT36452.1Cyclic nucleotide-binding protein. (171 aa)    
Predicted Functional Partners:
AKT40838.1
cAMP phosphodiesterase.
  
  
 0.965
AKT43340.1
cAMP phosphodiesterase.
  
  
 0.961
AKT39569.1
Cyclic nucleotide-binding protein.
  
  
0.929
AKT40891.1
Cyclic nucleotide-binding protein.
  
  
0.929
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.852
AKT36813.1
Uncharacterized protein.
 
 
 0.847
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.825
AKT40352.1
Cyclase.
 
 
 0.822
cyaA
Adenylate cyclase.
 
 
 0.821
AKT43918.1
Adenylate/guanylate cyclase.
 
 
 0.821
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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