Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKT38438.1 | AKT38623.1 | CMC5_025840 | CMC5_027700 | Uncharacterized protein. | DNA topoisomerase. | 0.594 |
AKT38438.1 | ku | CMC5_025840 | CMC5_008830 | Uncharacterized protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.784 |
AKT38438.1 | ligC | CMC5_025840 | CMC5_008840 | Uncharacterized protein. | ATP-dependent DNA ligase. | 0.734 |
AKT38623.1 | AKT38438.1 | CMC5_027700 | CMC5_025840 | DNA topoisomerase. | Uncharacterized protein. | 0.594 |
AKT38623.1 | AKT42128.1 | CMC5_027700 | CMC5_063510 | DNA topoisomerase. | Uncharacterized protein. | 0.755 |
AKT38623.1 | ku | CMC5_027700 | CMC5_008830 | DNA topoisomerase. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.610 |
AKT38623.1 | ligC | CMC5_027700 | CMC5_008840 | DNA topoisomerase. | ATP-dependent DNA ligase. | 0.545 |
AKT38623.1 | ligD | CMC5_027700 | CMC5_051300 | DNA topoisomerase. | DNA polymerase LigD, ligase. | 0.707 |
AKT42128.1 | AKT38623.1 | CMC5_063510 | CMC5_027700 | Uncharacterized protein. | DNA topoisomerase. | 0.755 |
AKT42128.1 | ku | CMC5_063510 | CMC5_008830 | Uncharacterized protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.413 |
ku | AKT38438.1 | CMC5_008830 | CMC5_025840 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Uncharacterized protein. | 0.784 |
ku | AKT38623.1 | CMC5_008830 | CMC5_027700 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | DNA topoisomerase. | 0.610 |
ku | AKT42128.1 | CMC5_008830 | CMC5_063510 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Uncharacterized protein. | 0.413 |
ku | ligC | CMC5_008830 | CMC5_008840 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | ATP-dependent DNA ligase. | 0.948 |
ku | ligD | CMC5_008830 | CMC5_051300 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | DNA polymerase LigD, ligase. | 0.848 |
ligC | AKT38438.1 | CMC5_008840 | CMC5_025840 | ATP-dependent DNA ligase. | Uncharacterized protein. | 0.734 |
ligC | AKT38623.1 | CMC5_008840 | CMC5_027700 | ATP-dependent DNA ligase. | DNA topoisomerase. | 0.545 |
ligC | ku | CMC5_008840 | CMC5_008830 | ATP-dependent DNA ligase. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.948 |
ligC | ligD | CMC5_008840 | CMC5_051300 | ATP-dependent DNA ligase. | DNA polymerase LigD, ligase. | 0.998 |
ligD | AKT38623.1 | CMC5_051300 | CMC5_027700 | DNA polymerase LigD, ligase. | DNA topoisomerase. | 0.707 |
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