Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome D ubiquinol oxidase subunit I. (441 aa)    
Predicted Functional Partners:
cydB
Cytochrome D ubiquinol oxidase subunit II.
 0.999
AKT36847.1
Uncharacterized protein.
       0.668
sdhB
Succinate dehydrogenase iron-sulfur subunit.
  
  
 0.667
sdhA
Succinate dehydrogenase.
  
  
 0.656
AKT36289.1
Succinate dehydrogenase flavoprotein subunit.
  
  
 0.638
sdhA-2
Succinate dehydrogenase.
     
 0.577
sdhA-3
Succinate dehydrogenase.
     
 0.577
AKT36850.1
Uncharacterized protein.
       0.499
AKT36846.1
Uncharacterized protein.
       0.491
katE
Hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.464
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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