AKT37143.1 protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKT37143.1

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

rnc

0.593

AKT37142.1

0.561

AKT41040.1

0.550

AKT37704.1

0.503

AKT41060.1

0.487

AKT43342.1

0.471

AKT42825.1

0.463

AKT43207.1

0.461

AKT36129.1

0.447

AKT38733.1

0.435

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT36129.1	AKT37143.1	CMC5_002420	CMC5_012730	Uncharacterized protein.	Uncharacterized protein.	0.447
AKT36129.1	AKT37704.1	CMC5_002420	CMC5_018460	Uncharacterized protein.	Uncharacterized protein.	0.776
AKT36129.1	AKT38733.1	CMC5_002420	CMC5_028770	Uncharacterized protein.	Alkaline serine protease.	0.761
AKT36129.1	AKT41040.1	CMC5_002420	CMC5_051980	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT36129.1	AKT41060.1	CMC5_002420	CMC5_052190	Uncharacterized protein.	Uncharacterized protein.	0.743
AKT36129.1	AKT42825.1	CMC5_002420	CMC5_070530	Uncharacterized protein.	Uncharacterized protein.	0.774
AKT36129.1	AKT43207.1	CMC5_002420	CMC5_074380	Uncharacterized protein.	Uncharacterized protein.	0.704
AKT37142.1	AKT37143.1	CMC5_012720	CMC5_012730	Uncharacterized protein.	Uncharacterized protein.	0.561
AKT37143.1	AKT36129.1	CMC5_012730	CMC5_002420	Uncharacterized protein.	Uncharacterized protein.	0.447
AKT37143.1	AKT37142.1	CMC5_012730	CMC5_012720	Uncharacterized protein.	Uncharacterized protein.	0.561
AKT37143.1	AKT37704.1	CMC5_012730	CMC5_018460	Uncharacterized protein.	Uncharacterized protein.	0.503
AKT37143.1	AKT38733.1	CMC5_012730	CMC5_028770	Uncharacterized protein.	Alkaline serine protease.	0.435
AKT37143.1	AKT41040.1	CMC5_012730	CMC5_051980	Uncharacterized protein.	Uncharacterized protein.	0.550
AKT37143.1	AKT41060.1	CMC5_012730	CMC5_052190	Uncharacterized protein.	Uncharacterized protein.	0.487
AKT37143.1	AKT42825.1	CMC5_012730	CMC5_070530	Uncharacterized protein.	Uncharacterized protein.	0.463
AKT37143.1	AKT43207.1	CMC5_012730	CMC5_074380	Uncharacterized protein.	Uncharacterized protein.	0.461
AKT37143.1	AKT43342.1	CMC5_012730	CMC5_075740	Uncharacterized protein.	Uncharacterized protein.	0.471
AKT37143.1	rnc	CMC5_012730	CMC5_065100	Uncharacterized protein.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.593
AKT37704.1	AKT36129.1	CMC5_018460	CMC5_002420	Uncharacterized protein.	Uncharacterized protein.	0.776
AKT37704.1	AKT37143.1	CMC5_018460	CMC5_012730	Uncharacterized protein.	Uncharacterized protein.	0.503