STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dehII-4Haloacid dehalogenase. (226 aa)    
Predicted Functional Partners:
AKT38398.1
Uncharacterized protein.
  
 0.918
AKT39831.1
4Fe-4S ferredoxin.
      0.853
tsaA
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
       0.543
AKT44074.1
Oxidoreductase.
 
  
 0.517
gph
Phosphoglycolate phosphatase.
 
  
 0.490
malS-2
Alpha-amylase.
 
  
 0.481
AKT44138.1
Glucose-fructose oxidoreductase.
 
  
 0.475
AKT41918.1
Multidrug MFS transporter; Belongs to the major facilitator superfamily.
  
  
 0.461
AKT42123.1
Transcriptional antiterminator.
     
 0.438
dehII-9
Haloacid dehalogenase.
 
  
 0.432
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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