Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT37363.1Histidine kinase. (471 aa)    
Predicted Functional Partners:
AKT36127.1
Transcriptional regulator.
   0.946
AKT39187.1
Uncharacterized protein.
 
 0.926
AKT41995.1
Transcriptional regulator.
 
 0.906
AKT37460.1
Diguanylate cyclase.
  
 
 0.866
AKT36799.1
Histidine kinase.
 
 
0.865
AKT43360.1
Histidine kinase.
 
 0.845
AKT39493.1
Uncharacterized protein.
 
  
 
 0.832
cheY-4
Chemotaxis protein CheY.
 
 
 0.823
cheY-16
Chemotaxis protein CheY.
 
 
 0.823
cheY-18
Chemotaxis protein CheY.
 
 
 0.823
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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