Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT37454.1Uncharacterized protein. (325 aa)    
Predicted Functional Partners:
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.742
croE
3-hydroxy-3-methylglutaryl-ACP synthase.
   
 
 0.655
AKT36512.1
Efflux protein, MATE family.
   
  
 0.599
vmrA
Multidrug transporter MATE.
   
  
 0.599
AKT41423.1
Na+-driven multidrug efflux pump.
   
  
 0.599
matE
Multidrug transporter MatE.
   
  
 0.599
AKT42160.1
Uncharacterized protein.
   
  
 0.599
AKT40650.1
Uncharacterized protein.
   
    0.593
rpsA
30S ribosomal protein S1.
   
    0.593
rpsA-2
30S ribosomal protein S1.
   
    0.593
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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