STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabT-34-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (446 aa)    
Predicted Functional Partners:
aldA-2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.926
gabD
Succinate-semialdehyde dehydrogenase.
 
 0.926
aldA-4
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.926
aldA-8
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.926
mmsA
Methylmalonate-semialdehyde dehydrogenase.
 
 0.926
aldA-9
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.926
AKT42931.1
Apolipoprotein acyltransferase.
  
 
 0.924
AKT38816.1
Amino acid decarboxylase.
 
 
 0.918
AKT37800.1
1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 0.915
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.904
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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