Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT37841.1Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily. (206 aa)    
Predicted Functional Partners:
rpoE-2
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.782
AKT40567.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.775
AKT43221.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.775
AKT36034.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
AKT36355.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
AKT38132.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
AKT42475.1
DNA-directed RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
AKT37840.1
Uncharacterized protein.
       0.773
AKT41293.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
AKT43629.1
ECF family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.764
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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