Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT37879.1Uncharacterized protein. (863 aa)    
Predicted Functional Partners:
AKT36614.1
Uncharacterized protein.
 
  
 0.563
AKT37880.1
Uncharacterized protein.
       0.556
mrdA
Penicillin-binding protein 2.
 
  
 0.526
AKT37460.1
Diguanylate cyclase.
  
 
 0.520
AKT42534.1
Uncharacterized protein.
 
  
 0.513
AKT38755.1
Uncharacterized protein.
 
  
 0.511
AKT42643.1
Exported peptidase.
 
  
 0.499
mltC-3
Murein transglycosylase.
 
  
 0.491
AKT37882.1
Uncharacterized protein; Belongs to the sigma-70 factor family.
  
    0.490
AKT37427.1
Uncharacterized protein.
 
   
 0.483
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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