Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cheY-5Chemotaxis protein CheY. (223 aa)    
Predicted Functional Partners:
AKT37894.1
Uncharacterized protein.
 0.997
AKT43926.1
Histidine kinase.
 
  
 0.959
cheY-20
Chemotaxis protein CheY.
  
  
 
0.914
cheY-19
Chemotaxis protein CheY.
  
 
 
 0.674
cheY-12
Chemotaxis protein CheY.
  
 
 
 0.617
cheY-10
Chemotaxis protein CheY.
  
     0.613
cheY-17
Chemotaxis protein CheY.
  
 
 
 0.599
AKT37896.1
Uncharacterized protein.
       0.596
AKT37897.1
Uncharacterized protein.
       0.596
AKT39680.1
Transcriptional regulator.
  
 
 
 0.584
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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