nadB protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nadB

L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (556 aa)

Predicted Functional Partners:

nadA

0.999

AKT41869.1

0.997

purA-2

0.917

argG

0.914

argG-2

0.914

AKT36555.1

0.913

purA

0.910

AKT38277.1

0.910

AKT37552.1

0.908

AKT37581.1

0.908

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT36555.1	AKT37552.1	CMC5_006730	CMC5_016930	Asparaginase.	Asparagine synthase.	0.913
AKT36555.1	AKT37581.1	CMC5_006730	CMC5_017220	Asparaginase.	Uncharacterized protein.	0.913
AKT36555.1	AKT38277.1	CMC5_006730	CMC5_024200	Asparaginase.	Uncharacterized protein.	0.905
AKT36555.1	argG	CMC5_006730	CMC5_004340	Asparaginase.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.909
AKT36555.1	argG-2	CMC5_006730	CMC5_043060	Asparaginase.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.909
AKT36555.1	nadB	CMC5_006730	CMC5_022150	Asparaginase.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.913
AKT36555.1	purA	CMC5_006730	CMC5_010330	Asparaginase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.905
AKT36555.1	purA-2	CMC5_006730	CMC5_060070	Asparaginase.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.905
AKT37552.1	AKT36555.1	CMC5_016930	CMC5_006730	Asparagine synthase.	Asparaginase.	0.913
AKT37552.1	AKT37581.1	CMC5_016930	CMC5_017220	Asparagine synthase.	Uncharacterized protein.	0.928
AKT37552.1	AKT38277.1	CMC5_016930	CMC5_024200	Asparagine synthase.	Uncharacterized protein.	0.909
AKT37552.1	argG	CMC5_016930	CMC5_004340	Asparagine synthase.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.913
AKT37552.1	argG-2	CMC5_016930	CMC5_043060	Asparagine synthase.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.913
AKT37552.1	nadB	CMC5_016930	CMC5_022150	Asparagine synthase.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.908
AKT37552.1	purA	CMC5_016930	CMC5_010330	Asparagine synthase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.909
AKT37552.1	purA-2	CMC5_016930	CMC5_060070	Asparagine synthase.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.915
AKT37581.1	AKT36555.1	CMC5_017220	CMC5_006730	Uncharacterized protein.	Asparaginase.	0.913
AKT37581.1	AKT37552.1	CMC5_017220	CMC5_016930	Uncharacterized protein.	Asparagine synthase.	0.928
AKT37581.1	AKT38277.1	CMC5_017220	CMC5_024200	Uncharacterized protein.	Uncharacterized protein.	0.909
AKT37581.1	argG	CMC5_017220	CMC5_004340	Uncharacterized protein.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.913