STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT38202.1Ligand-gated channel protein. (837 aa)    
Predicted Functional Partners:
AKT41963.1
Uncharacterized protein.
 
 
0.934
AKT40092.1
Uncharacterized protein.
 
 
0.929
AKT37542.1
TonB-dependent receptor.
 
 
 
 0.886
AKT38196.1
Peptidase.
 
  
 0.844
AKT38200.1
Lysine 6-monooxygenase.
     
 0.789
iucA-2
IucA/IucC family protein.
  
    0.785
AKT38201.1
Tetracycline resistance MFS efflux pump.
     
 0.781
AKT38198.1
Uncharacterized protein.
  
    0.779
AKT38193.1
Uncharacterized protein.
  
    0.769
iucA
IucA/IucC family protein.
  
    0.741
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.