STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT38227.1RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family. (425 aa)    
Predicted Functional Partners:
AKT42461.1
Uncharacterized protein.
 
     0.788
AKT42512.1
Dehydrogenase.
 
     0.786
AKT40531.1
Uncharacterized protein.
 
     0.784
AKT42497.1
Dehydrogenase.
 
     0.784
AKT42496.1
Uncharacterized protein.
 
     0.783
AKT35915.1
Uncharacterized protein.
 
     0.560
AKT35917.1
Uncharacterized protein.
 
     0.516
AKT38228.1
Uncharacterized protein.
       0.506
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.