Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT38375.1Uncharacterized protein. (454 aa)    
Predicted Functional Partners:
AKT39781.1
Uncharacterized protein.
 
  
  0.979
AKT41659.1
Dioxygenase.
 
   
 0.837
AKT41660.1
Dioxygenase.
 
   
 0.837
AKT38376.1
Uncharacterized protein.
       0.773
AKT40295.1
Transcriptional regulator.
  
    0.732
AKT39766.1
L-lysine 2,3-aminomutase.
 
   
 0.608
epmB
EF-P beta-lysylation protein EpmB.
 
   
 0.605
cndA
Uncharacterized protein.
  
 
 0.604
paaG
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.599
AKT43971.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.599
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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