Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMPilus assembly protein PilM. (353 aa)    
Predicted Functional Partners:
AKT38381.1
Uncharacterized protein.
  
 
 0.993
AKT38382.1
Uncharacterized protein.
 
 
 0.991
pilQ
Pilus assembly protein PilQ.
 
 
 0.988
pilC
Pilus biosynthesis protein PilC.
 
 
 
 0.972
AKT41693.1
Type II secretion system protein E.
 
 
 
 0.913
AKT42624.1
Uncharacterized protein.
  
 
   0.901
gspF
General secretion pathway protein GspF.
 
 
 
 0.885
AKT38383.1
typeIV pilus assembly protein pilP.
  
  
 0.829
AKT36225.1
Uncharacterized protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.819
AKT39790.1
Uncharacterized protein.
 
 
 
 0.805
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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