Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT38382.1Uncharacterized protein. (219 aa)    
Predicted Functional Partners:
pilM
Pilus assembly protein PilM.
 
 
 0.991
AKT38381.1
Uncharacterized protein.
  
 
 0.987
pilQ
Pilus assembly protein PilQ.
 
 
 0.983
AKT38383.1
typeIV pilus assembly protein pilP.
  
  
 0.943
AKT42624.1
Uncharacterized protein.
 
   0.922
pilC
Pilus biosynthesis protein PilC.
 
 
 
 0.821
AKT39381.1
Uncharacterized protein.
  
  
 0.794
AKT44011.1
Uncharacterized protein.
  
  
 0.781
AKT41693.1
Type II secretion system protein E.
  
 
 0.732
AKT41051.1
Fimbrial protein pilA.
 
  
 0.694
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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