Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKT35932.1 | AKT37460.1 | CMC5_000440 | CMC5_016010 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Diguanylate cyclase. | 0.496 |
AKT35932.1 | AKT38669.1 | CMC5_000440 | CMC5_028170 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.460 |
AKT35932.1 | AKT38761.1 | CMC5_000440 | CMC5_029070 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ATPase AAA. | 0.752 |
AKT35932.1 | AKT39233.1 | CMC5_000440 | CMC5_033820 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.453 |
AKT37460.1 | AKT35932.1 | CMC5_016010 | CMC5_000440 | Diguanylate cyclase. | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.496 |
AKT37460.1 | AKT37636.1 | CMC5_016010 | CMC5_017780 | Diguanylate cyclase. | Histidine kinase. | 0.999 |
AKT37460.1 | AKT38669.1 | CMC5_016010 | CMC5_028170 | Diguanylate cyclase. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
AKT37460.1 | AKT38761.1 | CMC5_016010 | CMC5_029070 | Diguanylate cyclase. | ATPase AAA. | 0.676 |
AKT37460.1 | AKT39233.1 | CMC5_016010 | CMC5_033820 | Diguanylate cyclase. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
AKT37460.1 | AKT40853.1 | CMC5_016010 | CMC5_050080 | Diguanylate cyclase. | Uncharacterized protein. | 0.833 |
AKT37460.1 | AKT41352.1 | CMC5_016010 | CMC5_055510 | Diguanylate cyclase. | Uncharacterized protein. | 0.833 |
AKT37460.1 | cheY-9 | CMC5_016010 | CMC5_038440 | Diguanylate cyclase. | Chemotaxis protein CheY. | 0.998 |
AKT37636.1 | AKT37460.1 | CMC5_017780 | CMC5_016010 | Histidine kinase. | Diguanylate cyclase. | 0.999 |
AKT37636.1 | AKT38669.1 | CMC5_017780 | CMC5_028170 | Histidine kinase. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.976 |
AKT37636.1 | AKT38761.1 | CMC5_017780 | CMC5_029070 | Histidine kinase. | ATPase AAA. | 0.645 |
AKT37636.1 | AKT39233.1 | CMC5_017780 | CMC5_033820 | Histidine kinase. | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.983 |
AKT37636.1 | AKT40853.1 | CMC5_017780 | CMC5_050080 | Histidine kinase. | Uncharacterized protein. | 0.830 |
AKT37636.1 | AKT41352.1 | CMC5_017780 | CMC5_055510 | Histidine kinase. | Uncharacterized protein. | 0.830 |
AKT37636.1 | cheY-9 | CMC5_017780 | CMC5_038440 | Histidine kinase. | Chemotaxis protein CheY. | 0.990 |
AKT38669.1 | AKT35932.1 | CMC5_028170 | CMC5_000440 | Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.460 |
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