STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT38897.1Slt family transglycosylase. (617 aa)    
Predicted Functional Partners:
AKT41977.1
Outer membrane protein.
  
   
 0.661
exbD-6
Biopolymer transporter ExbD.
  
     0.579
AKT38898.1
ATPase AAA; Belongs to the ClpA/ClpB family.
       0.523
AKT39814.1
Membrane protein.
  
     0.476
AKT38896.1
Phosphopeptide-binding protein.
       0.473
AKT39939.1
Bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
   0.457
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
   
 0.453
AKT40867.1
Uncharacterized protein.
  
     0.451
comL
Competence protein ComL.
 
     0.449
pbp
Penicillin-binding protein.
 
   
 0.448
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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