STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT38978.1DNA ligase. (227 aa)    
Predicted Functional Partners:
AKT38976.1
Uncharacterized protein.
 
     0.921
AKT38977.1
Uncharacterized protein.
       0.773
AKT42912.1
Uncharacterized protein.
  
     0.580
AKT42626.1
Protein kinase.
  
     0.567
AKT38145.1
Uncharacterized protein.
  
     0.547
AKT38975.1
Uncharacterized protein.
       0.541
AKT37419.1
Protein kinase.
  
     0.513
AKT37420.1
Protein kinase.
  
     0.493
AKT39461.1
Uncharacterized protein.
  
     0.492
AKT42897.1
Uncharacterized protein.
 
 
   0.448
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.