Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ompACell envelope biogenesis protein OmpA. (669 aa)    
Predicted Functional Partners:
AKT42996.1
Membrane protein.
  
 
 
 0.757
AKT41676.1
Membrane protein.
  
 
 
 0.754
AKT42280.1
Membrane protein.
  
 
 0.731
AKT39051.1
Uncharacterized protein.
 
    0.627
AKT37118.1
Uncharacterized protein.
   
    0.595
AKT38007.1
Universal stress protein.
   
    0.595
AKT40015.1
Uncharacterized protein.
  
 
   0.589
AKT39052.1
Uncharacterized protein.
 
 
   0.588
AKT38951.1
Uncharacterized protein.
  
 
   0.566
AKT41898.1
Uncharacterized protein.
  
 
   0.534
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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