Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT39178.1Uncharacterized protein. (748 aa)    
Predicted Functional Partners:
AKT39179.1
Uncharacterized protein.
 
     0.874
AKT37741.1
Uncharacterized protein.
 
     0.717
AKT41962.1
Uncharacterized protein.
  
  
 0.703
AKT37638.1
ABC transporter sodium permease.
  
  
 0.686
AKT43941.1
Uncharacterized protein.
 
     0.634
AKT37667.1
Nitroreductase.
  
  
 0.574
ndh-3
NADH dehydrogenase.
  
  
 0.568
AKT41312.1
Peptide synthetase.
  
  
 0.568
AKT39181.1
Uncharacterized protein; Belongs to the peptidase S8 family.
       0.515
AKT36931.1
Uncharacterized protein.
  
  
 0.510
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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