pip protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pip

Proline iminopeptidase; Belongs to the peptidase S33 family. (327 aa)

Predicted Functional Partners:

proC

0.902

AKT42746.1

0.900

cndA

0.704

AKT39261.1

0.641

acpP-4

0.511

tugA

0.468

AKT38854.1

0.463

miaB

0.447

paaY

0.441

thiS

0.424

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT38854.1	AKT39261.1	CMC5_030000	CMC5_034090	Uncharacterized protein.	Long-chain fatty acid--CoA ligase.	0.427
AKT38854.1	acpP-4	CMC5_030000	CMC5_041170	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
AKT38854.1	cndA	CMC5_030000	CMC5_053250	Uncharacterized protein.	Uncharacterized protein.	0.997
AKT38854.1	pip	CMC5_030000	CMC5_034080	Uncharacterized protein.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.463
AKT38854.1	tugA	CMC5_030000	CMC5_054090	Uncharacterized protein.	Uncharacterized protein.	0.996
AKT39261.1	AKT38854.1	CMC5_034090	CMC5_030000	Long-chain fatty acid--CoA ligase.	Uncharacterized protein.	0.427
AKT39261.1	cndA	CMC5_034090	CMC5_053250	Long-chain fatty acid--CoA ligase.	Uncharacterized protein.	0.508
AKT39261.1	miaB	CMC5_034090	CMC5_034100	Long-chain fatty acid--CoA ligase.	Dimethylallyladenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.570
AKT39261.1	paaY	CMC5_034090	CMC5_034110	Long-chain fatty acid--CoA ligase.	Phenylacetic acid degradation protein PaaY.	0.522
AKT39261.1	pip	CMC5_034090	CMC5_034080	Long-chain fatty acid--CoA ligase.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.641
AKT39261.1	thiS	CMC5_034090	CMC5_034120	Long-chain fatty acid--CoA ligase.	Thiamine biosynthesis protein ThiS.	0.540
AKT39261.1	tugA	CMC5_034090	CMC5_054090	Long-chain fatty acid--CoA ligase.	Uncharacterized protein.	0.505
AKT42746.1	pip	CMC5_069730	CMC5_034080	2OG-Fe(II) oxygenase.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.900
AKT42746.1	proC	CMC5_069730	CMC5_073740	2OG-Fe(II) oxygenase.	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.	0.900
acpP-4	AKT38854.1	CMC5_041170	CMC5_030000	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.433
acpP-4	cndA	CMC5_041170	CMC5_053250	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.403
acpP-4	pip	CMC5_041170	CMC5_034080	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.511
cndA	AKT38854.1	CMC5_053250	CMC5_030000	Uncharacterized protein.	Uncharacterized protein.	0.997
cndA	AKT39261.1	CMC5_053250	CMC5_034090	Uncharacterized protein.	Long-chain fatty acid--CoA ligase.	0.508
cndA	acpP-4	CMC5_053250	CMC5_041170	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.403