Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT39418.1Ligand-gated channel protein. (766 aa)    
Predicted Functional Partners:
AKT39420.1
Uncharacterized protein.
 
     0.947
hsdR
Type I deoxyribonuclease HsdR.
 
     0.814
AKT41963.1
Uncharacterized protein.
 
 
 0.602
AKT39685.1
TonB-dependent receptor.
  
   
 0.551
AKT39426.1
Iron ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.522
AKT39686.1
Uncharacterized protein.
  
     0.477
AKT39422.1
TonB-dependent receptor.
 
   
 0.474
AKT36136.1
Uncharacterized protein.
  
 
 0.471
AKT40253.1
Uncharacterized protein.
  
 
 0.471
AKT43138.1
Uncharacterized protein.
  
 
 0.471
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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