AKT39494.1 protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKT39494.1

Uncharacterized protein. (329 aa)

Predicted Functional Partners:

AKT42092.1

0.746

AKT35940.1

0.744

AKT36044.1

0.732

AKT38854.1

0.725

AKT43549.1

0.716

cndA

0.690

AKT41799.1

0.682

AKT37792.1

0.675

AKT44021.1

0.669

AKT39610.1

0.652

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT35940.1	AKT37792.1	CMC5_000520	CMC5_019340	Uncharacterized protein.	Uncharacterized protein.	0.477
AKT35940.1	AKT39494.1	CMC5_000520	CMC5_036410	Uncharacterized protein.	Uncharacterized protein.	0.744
AKT35940.1	AKT39610.1	CMC5_000520	CMC5_037590	Uncharacterized protein.	Uncharacterized protein.	0.491
AKT35940.1	AKT42092.1	CMC5_000520	CMC5_063150	Uncharacterized protein.	Uncharacterized protein.	0.447
AKT36044.1	AKT39494.1	CMC5_001560	CMC5_036410	Uncharacterized protein.	Uncharacterized protein.	0.732
AKT36044.1	AKT41799.1	CMC5_001560	CMC5_060100	Uncharacterized protein.	Uncharacterized protein.	0.707
AKT36044.1	AKT44021.1	CMC5_001560	CMC5_082590	Uncharacterized protein.	Uncharacterized protein.	0.758
AKT37792.1	AKT35940.1	CMC5_019340	CMC5_000520	Uncharacterized protein.	Uncharacterized protein.	0.477
AKT37792.1	AKT39494.1	CMC5_019340	CMC5_036410	Uncharacterized protein.	Uncharacterized protein.	0.675
AKT37792.1	AKT39610.1	CMC5_019340	CMC5_037590	Uncharacterized protein.	Uncharacterized protein.	0.425
AKT37792.1	AKT43549.1	CMC5_019340	CMC5_077810	Uncharacterized protein.	Uncharacterized protein.	0.437
AKT38854.1	AKT39494.1	CMC5_030000	CMC5_036410	Uncharacterized protein.	Uncharacterized protein.	0.725
AKT38854.1	AKT42092.1	CMC5_030000	CMC5_063150	Uncharacterized protein.	Uncharacterized protein.	0.665
AKT38854.1	cndA	CMC5_030000	CMC5_053250	Uncharacterized protein.	Uncharacterized protein.	0.997
AKT39494.1	AKT35940.1	CMC5_036410	CMC5_000520	Uncharacterized protein.	Uncharacterized protein.	0.744
AKT39494.1	AKT36044.1	CMC5_036410	CMC5_001560	Uncharacterized protein.	Uncharacterized protein.	0.732
AKT39494.1	AKT37792.1	CMC5_036410	CMC5_019340	Uncharacterized protein.	Uncharacterized protein.	0.675
AKT39494.1	AKT38854.1	CMC5_036410	CMC5_030000	Uncharacterized protein.	Uncharacterized protein.	0.725
AKT39494.1	AKT39610.1	CMC5_036410	CMC5_037590	Uncharacterized protein.	Uncharacterized protein.	0.652
AKT39494.1	AKT41799.1	CMC5_036410	CMC5_060100	Uncharacterized protein.	Uncharacterized protein.	0.682