ubiG-2 protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ubiG-2

3-demethylubiquinone-9 3-methyltransferase. (266 aa)

Predicted Functional Partners:

AKT41655.1

0.639

smtA-3

0.539

ubiE

0.522

AKT36815.1

0.506

AKT39958.1

0.464

AKT40506.1

0.451

AKT41634.1

0.448

AKT41633.1

0.435

bioB

0.425

AKT39779.1

0.408

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT36815.1	AKT39779.1	CMC5_009360	CMC5_039300	Uncharacterized protein.	Histidine kinase.	0.448
AKT36815.1	AKT39958.1	CMC5_009360	CMC5_041110	Uncharacterized protein.	Uncharacterized protein.	0.718
AKT36815.1	AKT40506.1	CMC5_009360	CMC5_046610	Uncharacterized protein.	Uncharacterized protein.	0.751
AKT36815.1	AKT41633.1	CMC5_009360	CMC5_058400	Uncharacterized protein.	Uncharacterized protein.	0.692
AKT36815.1	AKT41634.1	CMC5_009360	CMC5_058410	Uncharacterized protein.	Uncharacterized protein.	0.761
AKT36815.1	AKT41655.1	CMC5_009360	CMC5_058610	Uncharacterized protein.	Uncharacterized protein.	0.773
AKT36815.1	ubiG-2	CMC5_009360	CMC5_038100	Uncharacterized protein.	3-demethylubiquinone-9 3-methyltransferase.	0.506
AKT39779.1	AKT36815.1	CMC5_039300	CMC5_009360	Histidine kinase.	Uncharacterized protein.	0.448
AKT39779.1	AKT39958.1	CMC5_039300	CMC5_041110	Histidine kinase.	Uncharacterized protein.	0.607
AKT39779.1	AKT40506.1	CMC5_039300	CMC5_046610	Histidine kinase.	Uncharacterized protein.	0.741
AKT39779.1	AKT41633.1	CMC5_039300	CMC5_058400	Histidine kinase.	Uncharacterized protein.	0.637
AKT39779.1	AKT41634.1	CMC5_039300	CMC5_058410	Histidine kinase.	Uncharacterized protein.	0.726
AKT39779.1	AKT41655.1	CMC5_039300	CMC5_058610	Histidine kinase.	Uncharacterized protein.	0.665
AKT39779.1	ubiG-2	CMC5_039300	CMC5_038100	Histidine kinase.	3-demethylubiquinone-9 3-methyltransferase.	0.408
AKT39958.1	AKT36815.1	CMC5_041110	CMC5_009360	Uncharacterized protein.	Uncharacterized protein.	0.718
AKT39958.1	AKT39779.1	CMC5_041110	CMC5_039300	Uncharacterized protein.	Histidine kinase.	0.607
AKT39958.1	AKT40506.1	CMC5_041110	CMC5_046610	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT39958.1	AKT41633.1	CMC5_041110	CMC5_058400	Uncharacterized protein.	Uncharacterized protein.	0.735
AKT39958.1	AKT41634.1	CMC5_041110	CMC5_058410	Uncharacterized protein.	Uncharacterized protein.	0.763
AKT39958.1	AKT41655.1	CMC5_041110	CMC5_058610	Uncharacterized protein.	Uncharacterized protein.	0.763