STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (643 aa)    
Predicted Functional Partners:
AKT43490.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.964
rocF
Arginase; Belongs to the arginase family.
 
 
 0.941
speB
Agmatinase; Belongs to the arginase family.
 
 
 0.939
AKT38555.1
Uncharacterized protein.
    
 0.921
AKT42335.1
Arginine N-succinyltransferase.
  
  
  0.911
argH
Argininosuccinate lyase.
     
 0.839
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
0.476
AKT39962.1
Malonyl CoA-ACP transacylase.
   
    0.463
AKT43891.1
Malonate decarboxylase subunit epsilon.
   
    0.463
AKT39772.1
Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
       0.434
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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