STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT39953.1acyl-CoA ligase. (544 aa)    
Predicted Functional Partners:
AKT41312.1
Peptide synthetase.
 
 
0.919
AKT39952.1
Asparagine synthase.
 
  
 0.850
acpP-3
Acyl carrier protein.
 
   0.835
ajuL
Uncharacterized protein.
 
0.821
croI
Uncharacterized protein.
  
0.806
AKT41198.1
Uncharacterized protein.
  
0.706
croD
Polyketide synthase.
 
  0.699
AKT41495.1
Uncharacterized protein.
 
   0.659
nadE-3
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
 
     0.627
AKT36153.1
AMP-dependent synthetase.
 
 
0.623
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.