Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
araC-6AraC family transcriptional regulator. (304 aa)    
Predicted Functional Partners:
AKT40009.1
Uncharacterized protein.
       0.741
araC-12
AraC family transcriptional regulator.
  
     0.648
AKT40011.1
Uncharacterized protein.
       0.639
araC-17
AraC family transcriptional regulator.
  
     0.632
araC-5
AraC family transcriptional regulator.
  
     0.614
AKT40013.1
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.540
araC-8
AraC family transcriptional regulator.
  
     0.487
araC-10
AraC family transcriptional regulator.
  
     0.417
araC-22
AraC family transcriptional regulator.
  
     0.417
AKT40008.1
Uncharacterized protein.
       0.403
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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