oppB-2 protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oppB-2

Peptide ABC transporter permease. (306 aa)

Predicted Functional Partners:

oppB-3

0.999

dppD-3

0.999

dppD-4

0.999

AKT40041.1

0.998

dppD

0.995

oppB

0.970

AKT35961.1

0.953

AKT37087.1

0.746

AKT40040.1

0.536

AKT40038.1

0.426

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT35961.1	AKT37087.1	CMC5_000730	CMC5_012130	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Uncharacterized protein.	0.945
AKT35961.1	AKT40041.1	CMC5_000730	CMC5_041940	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter substrate-binding protein.	0.866
AKT35961.1	dppD	CMC5_000730	CMC5_000740	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.983
AKT35961.1	oppB	CMC5_000730	CMC5_035500	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease.	0.998
AKT35961.1	oppB-2	CMC5_000730	CMC5_041950	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease.	0.953
AKT35961.1	oppB-3	CMC5_000730	CMC5_041960	Uncharacterized protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease.	0.992
AKT37087.1	AKT35961.1	CMC5_012130	CMC5_000730	Uncharacterized protein.	Uncharacterized protein; Belongs to the ABC transporter superfamily.	0.945
AKT37087.1	dppD	CMC5_012130	CMC5_000740	Uncharacterized protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.472
AKT37087.1	dppD-3	CMC5_012130	CMC5_041970	Uncharacterized protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.472
AKT37087.1	dppD-4	CMC5_012130	CMC5_041980	Uncharacterized protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.472
AKT37087.1	oppB	CMC5_012130	CMC5_035500	Uncharacterized protein.	Peptide ABC transporter permease.	0.970
AKT37087.1	oppB-2	CMC5_012130	CMC5_041950	Uncharacterized protein.	Peptide ABC transporter permease.	0.746
AKT37087.1	oppB-3	CMC5_012130	CMC5_041960	Uncharacterized protein.	Peptide ABC transporter permease.	0.714
AKT40038.1	AKT40040.1	CMC5_041910	CMC5_041930	Uncharacterized protein.	Uncharacterized protein.	0.598
AKT40038.1	AKT40041.1	CMC5_041910	CMC5_041940	Uncharacterized protein.	Peptide ABC transporter substrate-binding protein.	0.426
AKT40038.1	dppD-3	CMC5_041910	CMC5_041970	Uncharacterized protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.424
AKT40038.1	dppD-4	CMC5_041910	CMC5_041980	Uncharacterized protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.424
AKT40038.1	oppB-2	CMC5_041910	CMC5_041950	Uncharacterized protein.	Peptide ABC transporter permease.	0.426
AKT40038.1	oppB-3	CMC5_041910	CMC5_041960	Uncharacterized protein.	Peptide ABC transporter permease.	0.426
AKT40040.1	AKT40038.1	CMC5_041930	CMC5_041910	Uncharacterized protein.	Uncharacterized protein.	0.598