Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppB-3Peptide ABC transporter permease. (339 aa)    
Predicted Functional Partners:
oppB-2
Peptide ABC transporter permease.
 0.999
dppD-3
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.999
dppD-4
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.999
AKT40041.1
Peptide ABC transporter substrate-binding protein.
 
 
 0.997
AKT35961.1
Uncharacterized protein; Belongs to the ABC transporter superfamily.
 
 0.994
dppD
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.994
AKT39404.1
Uncharacterized protein.
 
 
 0.978
AKT37087.1
Uncharacterized protein.
  
 
 0.922
AKT37599.1
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
  
 0.893
AKT40040.1
Uncharacterized protein.
       0.536
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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