Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppD-4Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (361 aa)    
Predicted Functional Partners:
oppB-2
Peptide ABC transporter permease.
 0.999
oppB-3
Peptide ABC transporter permease.
 0.999
AKT40041.1
Peptide ABC transporter substrate-binding protein.
 
 
 0.996
oppB
Peptide ABC transporter permease.
 
 0.989
dppD-3
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.982
AKT39404.1
Uncharacterized protein.
 
 
 0.937
AKT36041.1
Sugar ABC transporter permease.
   
  
 0.619
AKT37087.1
Uncharacterized protein.
  
 
 0.564
AKT40040.1
Uncharacterized protein.
       0.533
AKT40038.1
Uncharacterized protein.
       0.424
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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