Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT40171.1Outer membrane efflux protein. (541 aa)    
Predicted Functional Partners:
AKT40413.1
MFP transporter.
  
  
 0.954
AKT39657.1
Uncharacterized protein.
  
  
  0.945
AKT41993.1
Transporter.
  
  
  0.939
AKT37328.1
Uncharacterized protein.
  
  
  0.935
AKT42348.1
Uncharacterized protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.849
AKT43369.1
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.836
AKT41781.1
RND transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.803
mexH
MexH family multidrug efflux RND transporter periplasmic adaptor subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.790
AKT44001.1
Uncharacterized protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.785
mexE
MexE family multidrug efflux RND transporter periplasmic adaptor subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.781
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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