STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
motA-3Flagellar motor protein MotA. (220 aa)    
Predicted Functional Partners:
exbD-3
Biopolymer transporter ExbD.
 
 
 0.866
exbD-4
Biopolymer transporter ExbD.
 
 
 0.863
AKT41963.1
Uncharacterized protein.
 
 
 0.755
AKT40092.1
Uncharacterized protein.
 
 
 0.743
AKT40178.1
Biopolymer transporter.
  
 
 0.731
AKT36573.1
Uncharacterized protein.
 
 
 0.729
motA
Flagellar motor protein MotA.
  
     0.723
AKT40179.1
Uncharacterized protein.
  
 
 0.721
AKT41031.1
Uncharacterized protein.
 
 
 0.688
exbD-6
Biopolymer transporter ExbD.
 
 
 0.655
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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