opcA protein (Chondromyces crocatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

opcA

OxPPCycle protein OpcA. (397 aa)

Predicted Functional Partners:

zwf

0.895

gnd-2

0.836

pgl

0.740

AKT36416.1

0.700

AKT40213.1

0.697

AKT42148.1

0.690

AKT42753.1

0.679

AKT38058.1

0.677

AKT41589.1

0.635

AKT41838.1

0.628

Your Current Organism:

Chondromyces crocatus

NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT36416.1	AKT38058.1	CMC5_005290	CMC5_021990	Uncharacterized protein.	Uncharacterized protein.	0.777
AKT36416.1	AKT40213.1	CMC5_005290	CMC5_043660	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT36416.1	AKT41589.1	CMC5_005290	CMC5_057960	Uncharacterized protein.	Uncharacterized protein.	0.764
AKT36416.1	AKT41838.1	CMC5_005290	CMC5_060490	Uncharacterized protein.	Uncharacterized protein.	0.715
AKT36416.1	AKT42148.1	CMC5_005290	CMC5_063710	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT36416.1	AKT42753.1	CMC5_005290	CMC5_069800	Uncharacterized protein.	Uncharacterized protein.	0.774
AKT36416.1	opcA	CMC5_005290	CMC5_043890	Uncharacterized protein.	OxPPCycle protein OpcA.	0.700
AKT38058.1	AKT36416.1	CMC5_021990	CMC5_005290	Uncharacterized protein.	Uncharacterized protein.	0.777
AKT38058.1	AKT40213.1	CMC5_021990	CMC5_043660	Uncharacterized protein.	Uncharacterized protein.	0.770
AKT38058.1	AKT41589.1	CMC5_021990	CMC5_057960	Uncharacterized protein.	Uncharacterized protein.	0.770
AKT38058.1	AKT41838.1	CMC5_021990	CMC5_060490	Uncharacterized protein.	Uncharacterized protein.	0.747
AKT38058.1	AKT42148.1	CMC5_021990	CMC5_063710	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT38058.1	AKT42753.1	CMC5_021990	CMC5_069800	Uncharacterized protein.	Uncharacterized protein.	0.773
AKT38058.1	opcA	CMC5_021990	CMC5_043890	Uncharacterized protein.	OxPPCycle protein OpcA.	0.677
AKT40213.1	AKT36416.1	CMC5_043660	CMC5_005290	Uncharacterized protein.	Uncharacterized protein.	0.775
AKT40213.1	AKT38058.1	CMC5_043660	CMC5_021990	Uncharacterized protein.	Uncharacterized protein.	0.770
AKT40213.1	AKT41589.1	CMC5_043660	CMC5_057960	Uncharacterized protein.	Uncharacterized protein.	0.767
AKT40213.1	AKT41838.1	CMC5_043660	CMC5_060490	Uncharacterized protein.	Uncharacterized protein.	0.731
AKT40213.1	AKT42148.1	CMC5_043660	CMC5_063710	Uncharacterized protein.	Uncharacterized protein.	0.771
AKT40213.1	AKT42753.1	CMC5_043660	CMC5_069800	Uncharacterized protein.	Uncharacterized protein.	0.774