STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntR-2GntR family transcriptional regulator. (478 aa)    
Predicted Functional Partners:
dapA-2
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.629
AKT40398.1
Uncharacterized protein.
       0.546
AKT37626.1
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.545
AKT38343.1
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.545
AKT41940.1
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.545
AKT44022.1
Nif3-like dinuclear metal center hexameric protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.516
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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