Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT40531.1Uncharacterized protein. (146 aa)    
Predicted Functional Partners:
AKT38227.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.784
AKT42460.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.783
AKT35914.1
RNA polymerase subunit sigma-24; Belongs to the sigma-70 factor family.
 
    0.782
AKT40530.1
Polyketide cyclase.
 
     0.516
AKT40532.1
X-Pro dipeptidyl-peptidase.
       0.438
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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